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DBCollHIV: a database system for collaborative HIV analysis in Brazil
Luciano V. Araújo1, Marcelo A. Soares2, Suelene M. Oliveira3, Pedro Chequer3,
Amilcar Tanuri2, Ester C. Sabino4 and João E. Ferreira1
1Departamento de Ciência da Computação, Universidade de São Paulo, São Paulo, SP, Brasil
2Departamento de Genética, Universidade do Rio de Janeiro, Rio de Janeiro, RJ, Brasil
3Programa Nacional de DST/AIDS, Ministério Brasileiro de Saúde Pública, Brasília, DF, Brasil
4Hemocentro de São Paulo, São Paulo, SP, Brasil
Corresponding author: L.V. Araújo
E-mail: luciano@ime.usp.br
Genet. Mol. Res. 5 (1): 203-215 (2006)
Received January 10, 2006
Accepted February 17, 2006
Published March 31, 2006

ABSTRACT. We developed a database system for collaborative HIV analysis (DBCollHIV) in Brazil. The main purpose of our DBCollHIV project was to develop an HIV-integrated database system with analytical bioinformatics tools that would support the needs of Brazilian research groups for data storage and sequence analysis. Whenever authorized by the principal investigator, this system also allows the integration of data from different studies and/or the release of the data to the general public. The development of a database that combines sequences associated with clinical/epidemiological data is difficult without the active support of interdisciplinary investigators. A functional database that securely stores data and helps the investigator to manipulate their sequences before publication would be an attractive tool for investigators depositing their data and collaborating with other groups. DBCollHIV allows investigators to manipulate their own datasets, as well as integrating molecular and clinical HIV data, in an innovative fashion.

Key words: HIV/AIDS, Relational database, HIV database, Resistance and subtype algorithms, Collaborative HIV database, Bioinformatics tools

 

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