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Paracoccidioides brasiliensis translation and protein fate machineries revealed by functional genome analysis
Diorge Paulo de Souza*, Simoneide Souza Silva*, Alessandra J. Baptista*,
André Moraes Nicola, Cynthia M. Kyaw and Ildinete Silva-Pereira
Instituto de Biologia, Departamento de Biologia Celular, Laboratório de Biologia Molecular,
Universidade de Brasília, Campus Universitário Darcy Ribeiro, Asa Norte,
70910-900 Brasília, DF, Brasil
*These authors contributed equally to this study
The present address of D.P. de Souza is Departamento de Bioquímica,
Universidade de São Paulo, São Paulo, SP, Brasil
Corresponding author: I. Silva-Pereira
E-mail: xocolau@unb.br
Genet. Mol. Res. 4 (2): 273-289 (2005)
Received January 18, 2005
Accepted May 5, 2005
Published June 29, 2005

ABSTRACT. The translational and post-translational modification machineries of Paracoccidioides brasiliensis were assessed by means of comparative analyses of PbAESTs (P. brasiliensis assembled expressed sequence tags) with sequences deposited on different databases. Of the 79 sequences corresponding to cytosolic ribosomal proteins, we were able to find 78 in the P. brasiliensis transcriptome. Nineteen of the 27 Saccharomyces cerevisiae genes related to translation initiation were also found. All eukaryotic elongation factors were detected in P. brasiliensis transcriptome, with eEF1A as one of the most expressed genes. Translation termination is performed, in eukaryotes, by factors 1 and 3 (eRF1, eRF3). In P. brasiliensis transcriptome it was possible to identify eRF3, but not eRF1. Sixteen PbAESTs showing aminoacyl-tRNA synthetase-predicted activities were found in our analyses, but no cysteinyl-, leucyl-, asparagyl- and arginyl-tRNA synthetases were detected. Among the mitochondrial ribosomal proteins, we have found 20 and 18 orthologs to S. cerevisiae large and small ribosomal subunit proteins, respectively. We have also found three PbAESTs similar to Neurospora crassa mitochondrial ribosomal genes, with no similarity with S. cerevisiae genes. Although orthologs to S. cerevisiae mitochondrial EF-Tu, EF-G and RF1 have been found in P. brasiliensis transcriptome, no sequences corresponding to functional EF-Ts were detected. In addition, 64 and 28 PbAESTs associated to protein modification and degradation, respectively, were found. These results suggest that these machineries are well conserved in P. brasiliensis, when compared to other organisms.

Key words: Paracoccidioides brasiliensis, Transcriptome analysis, Translation, Protein modification, Protein degradation, 26S proteasome

 

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