Table of Contents

Genet. Mol. Res. 6 (4) 2007

X-meeting - International Conference of the AB3C
Fortaleza, CE, Brazil, August 10, 2006

Guest Editors
Roberto M. Cesar-Jr., USP
Marcelo Santoro, UFMG
Associated Editor from GMR
Vasco Azevedo, UFMG

Genet. Mol. Res. 6 (4): 730-1011 (2007)

Presentation

Genet. Mol. Res. 6 (4) 2007

Genome-wide partial correlation analysis of Escherichia coli microarray data

D.F.T. Veiga, F.F.R. Vicente, M. Grivet, A. de la Fuente and A.T.R. Vasconcelos

Genet. Mol. Res. 6 (4): 730-742 (2007)

Optimal clone identifier for genomic shotgun libraries: "OC Identifier tool"

M.E. Cantão, J.E. Ferreira and E.G.M. Lemos

Genet. Mol. Res. 6 (4): 743-755 (2007)

Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences

F. Prosdocimi, D.A.O. Lopes, F.C. Peixoto, M.M. Mourão, L.G.G. Pacífico, R.A. Ribeiro and
J.M. Ortega

Genet. Mol. Res. 6 (4): 756-765 (2007)

Intraflagellar transport complex in Leishmania spp. In silico genome-wide screening and annotation of gene function

J.J.S. Gouveia, E.J.R. Vasconcelos, A.C.L. Pacheco, R. Araújo-Filho, A.R.S. Maia, M.T. Kamimura, M.P. Costa, D.A. Viana, R.B. Costa, R. Maggioni and D.M. Oliveira

Genet. Mol. Res. 6 (4): 766-798 (2007)

On the characterization of energy networks of proteins

C.J.M. Veloso, C.H. Silveira, R.C. Melo, C. Ribeiro, J.C.D. Lopes, M.M. Santoro and W. Meira Jr.

Genet. Mol. Res. 6 (4): 799-820 (2007)

A framework for modeling of juxtacrine signaling systems

L.C.S. Rozante, M.D. Gubitoso and S.R. Matioli

Genet. Mol. Res. 6 (4): 821-845 (2007)

Proteinase inhibition using small Bowman-Birk-type structures

J.H. Fernandez, M.O. Mello, L. Galgaro, A.S. Tanaka,M.C. Silva-Filho and G. Neshich

Genet. Mol. Res. 6 (4): 846-858 (2007)

miRNApath: a database of miRNAs, target genes and metabolic pathways

A.O. Chiromatzo, T.Y.K. Oliveira, G. Pereira, A.Y. Costa, C.A.E. Montesco, D.E. Gras, F. Yosetake, J.B. Vilar, M. Cervato, P.R.R. Prado, R.G.C.C.L. Cardenas, R. Cerri, R.L. Borges, R.N. Lemos, S.M. Alvarenga, V.R.C. Perallis, D.G. Pinheiro, I.T. Silva, R.M. Brandão, M.A.V. Cunha, S. Giuliatti and W.A. Silva Jr

Genet. Mol. Res. 6 (4): 859-865 (2007)

Abundance and diversity of resistance genes in the sugarcane transcriptome revealed by in silico analysis

A.C. Wanderley-Nogueira, N.M. Soares-Cavalcanti, D.A.L. Morais, L.C. Belarmino, A. Barbosa-Silva and A.M. Benko-Iseppon

Genet. Mol. Res. 6 (4): 866-889 (2007)

Application of MUTIC to the exploration of gene expression data in prostate cancer

B. Goertzel, C. Pennachin, L.S. Coelho and M.A. Mudado

Genet. Mol. Res. 6 (4): 890-900 (2007)

Ab initio 3-D structure prediction of an artificially designed three-α-helix bundle via all-atom molecular dynamics simulations

A. Breda, D.S. Santos, L.A. Basso and O. Norberto de Souza

Genet. Mol. Res. 6 (4): 901-910 (2007)

Sting_RDB: a relational database of structural parameters for protein analysis with support for data warehousing and data mining

S.R.M. Oliveira, G.V. Almeida, K.R.R. Souza, D.N. Rodrigues, P.R. Kuser-Falcão, M.E.B. Yamagishi, E.H. Santos, F.D. Vieira, J.G. Jardine and G. Neshich

Genet. Mol. Res. 6 (4): 911-922 (2007)

Electrostatic potential calculation for biomolecules - creating a database of pre-calculated values reported on a per residue basis for all PDB protein structures

W. Rocchia and G. Neshich

Genet. Mol. Res. 6 (4): 923-936 (2007)

BNDb - Biomolecules Nucleus Database: an integrated proteomics and transcriptomics database

A.C. Faria-Campos, R.R. Gomes, F.S. Moratelli, H. Rausch-Fernandes, G.R. Franco and S.V.A. Campos

Genet. Mol. Res. 6 (4): 937-945 (2007)

Finding protein-protein interaction patterns by contact map matching

R.C. Melo, C. Ribeiro, C.S. Murray, C.J.M. Veloso, C.H. da Silveira, G. Neshich, W. Meira Jr.,
R.L. Carceroni and M.M. Santoro

Genet. Mol. Res. 6 (4): 946-963 (2007)

A simple genetic algorithm for multiple sequence alignment

C. Gondro and B.P. Kinghorn

Genet. Mol. Res. 6 (4): 964-982 (2007)

Application of latent semantic indexing to evaluate the similarity of sets of sequences without multiple alignments character-by-character

B.R.G.M. Couto, A.P. Ladeira and M.A. Santos

Genet. Mol. Res. 6 (4): 983-999 (2007)

Prediction and biochemical characterization of intrinsic disorder in the structure of proteolysis-inducing factor/dermcidin

G. Majczak,S. Lilla, M. Garay-Malpartida, J. Markovic, F.J. Medrano, G. de Nucci and J.E. Belizário

Genet. Mol. Res. 6 (4): 1000 - 1011 (2007)

Thesis Abstract

Analysis of the nucleolar cycle in the seminiferous epithelium of rodents

R.L. Peruquetti

Genet. Mol. Res. 6 (4): 1012 (2007)

Short Comunication

Microsporogenesis in inbred line of popcorn (Zea mays L.)

G.C.L. Ricci, N. Silva, M.S. Pagliarini and C.A. Scapim

Genet. Mol. Res. 6 (4): 1013 - 1018 (2007)

Mutation analysis of gene PAX6 in human gliomas

G.R. Pinto, C.A. Clara, M.J. Santos, J.R.W. Almeida, R.R. Burbano, J.A. Rey and C. Casartelli

Genet. Mol. Res. 6 (4): 1019 - 1025 (2007)

Isolation and characterization of microsatellite DNA in the piracema fish Prochilodus lineatus (Characiformes)

G.M. Yazbeck and E. Kalapothakis

Genet. Mol. Res. 6 (4): 1026 - 1034 (2007)

LEPR p.Q223R, β3-AR p.W64R and LEP c.-2548G>A gene variants in obese Brazilian subjects

S.F.P. Duarte, E.A. Francischetti, V.A. Genelhu, P.H. Cabello and M.M.G. Pimentel

Genet. Mol. Res. 6 (4): 1035 - 1043 (2007)

Pedigree analyses in the Breeding Program for Nellore Cattle

P.A. Vozzi, C.R. Marcondes, L.A.F. Bezerra and R.B. Lôbo

Genet. Mol. Res. 6 (4): 1044 - 1050 (2007)

Candida albicans GRX2, encoding a putative glutaredoxin, is required for virulence in a murine model

G.M. Chaves, S. Bates, D.M. MacCallum and F.C. Odds

Genet. Mol. Res. 6 (4): 1051 - 1063 (2007)

An optimized mini-preparation method to obtain high-quality genomic DNA from mature leaves of sunflower

J.T. Li, J. Yang, D.C. Chen, X.L. Zhang and Z.S. Tang

Genet. Mol. Res. 6 (4): 1064-1071 (2007)

Chromosome instability in industrial strains of Saccharomyces cerevisiae batch cultivated under laboratory conditions

B.T.L. Lucena, E.A. Silva-Filho, M.R.M. Coimbra, J.O.F. Morais, D.A. Simões and M.A. Morais Jr.

Genet. Mol. Res. 6 (4): 1072-1084 (2007)

Case Report

Association between a new 3q;5q chromosomal translocation and dystrophy of human retinal pigment epithelium

S.R.F. Pereira, A.S. Silva, E.P. Bormann and O. Kuppinger

Genet. Mol. Res. 6 (4): 1085-1090 (2007)

Genetic trends of absolute and relative heart weight in a male broiler line

L.G. Gaya, A.M.M.A. Costa, J.B.S. Ferraz, F.M. Rezende, E.C. Mattos, J.P. Eler, T. Michelan Filho, G.B. Mourão and L.G.G. Figueiredo

Genet. Mol. Res. 6 (4): 1091-1096 (2007)

Lack of interpopulation genetic structure in the genus Stegastes (Perciformes) with indication of local introgression

E.A. Dias Jr., A.S. Souza and W.F. Molina

Genet. Mol. Res. 6 (4): 1097-1106 (2007)

Microsporogenesis in sexual Brachiaria hybrids (Poaceae)

V.A. Fuzinatto, M.S. Pagliarini and C.B. Valle

Genet. Mol. Res. 6 (4): 1107-1117 (2007)

Cross-amplification tests of ungulate primers in the endangered Neotropical pampas deer (Ozotoceros bezoarticus)

M. Cosse, S. González and J.E. Maldonado

Genet. Mol. Res. 6 (4): 1118-1122 (2007)

Molecular characterization of Ephedra species found in Pakistan

S. Ghafoor, M.M. Shah, H. Ahmad, Z.A. Swati, S.H. Shah, A. Pervez and U. Farooq

Genet. Mol. Res. 6 (4): 1123-1130 (2007)

Increased gene coverage and Alu frequency in large linkage disequilibrium blocks of the human genome

Y. Wang, P.Y. Fong, F.C.C. Leung, W. Mak and P.C. Sham

Genet. Mol. Res. 6 (4): 1131-1141 (2007)

Development of SRS.php, a Simple Object Access Protocol-based library for data acquisition from integrated biological databases

A. Barbosa-Silva, E. Pafilis, J.M. Ortega and R. Schneider

Genet. Mol. Res. 6 (4): 1142-1150 (2007)

Cassava genetic resources and their utilization for breeding of the crop

N.M.A. Nassar

Genet. Mol. Res. 6 (4): 1151-1168 (2007)

Structural model and ligand interactions of the Xanthomonas axonopodis pv. citri oligopeptide-binding protein

A. Moutran, A. Balan, L.C.S. Ferreira, A. Giorgetti, A. Tramontano and R.C.C. Ferreira

Genet. Mol. Res. 6 (4): 1169-1177 (2007)

Comparative genomics of grasses tolerant to aluminum

S.N. Jardim

Genet. Mol. Res. 6 (4): 1178-1189 (2007)

Genetic parameters for growth traits of a Brazilian Bos taurus x Bos indicus beef composite

G.B. Mourão, J.B.S. Ferraz, J.P. Eler, J.C.C. Balieiro, R.S. Bueno, E.C. Mattos and L.G.G. Figueiredo

Genet. Mol. Res. 6 (4): 1190-1200 (2007)